mRNA_A-nodosum_M_contig10.151.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A6H5K8N1_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N1_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.240e-40 Identity = 86/153 (56.21%), Postives = 101/153 (66.01%), Query Frame = 2 Query: 311 MTSLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIA------------------------------GLIKGIDEVEGMLLHNIAQGRLNDRGNYAVNVAPRSQEPA-TKKDGVIEVEHIDGKVGNLPEDVTVSRS 676 M SLRREVLGGYRRL+R R+VAFK D+TML ASKQQLR+EF+ NK + +P KI GLIKGI+EVE ML +NIAQ RLNDRG+YAVNVAPR+ E A ++ G IEVEHI GK G+LP DVTV+ S Sbjct: 1 MASLRREVLGGYRRLMRVRVVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQQHSRARGSLDRLYRMESACQIADRFLHVPGLIKGINEVEDMLKYNIAQARLNDRGHYAVNVAPRTPEAAGAEEGGTIEVEHIGGKAGDLPGDVTVTGS 153
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: D8LJV8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV8_ECTSI) HSP 1 Score: 123 bits (308), Expect = 8.220e-32 Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 2 Query: 311 MTSLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRLNDRGNY 556 M SLRREVLGGYRRL+R R+VAF+ D+TML ASKQQLR+EF+ NK + +P KIAGLIKGI+EVE ML +NIAQ RLNDRGNY Sbjct: 1 MASLRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKIAGLIKGINEVEEMLKYNIAQARLNDRGNY 82
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A7S1U0R5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0R5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 6.420e-18 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 2 Query: 311 MTSLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRLNDRGNYAVNV 568 M + R + L G+RRLLRAR V F+GD+ LAAS+ +LR +F N+ + KIA +++GIDEVE M+L+N QG LN++GNY + Sbjct: 1 MAATRLQALHGFRRLLRARKVLFRGDANALAASQLELRSQFQTNRHETDAAKIAEMLRGIDEVEDMMLNNFVQGELNEQGNYTTTI 86
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A7S2C810_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C810_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.700e-16 Identity = 43/107 (40.19%), Postives = 70/107 (65.42%), Query Frame = 2 Query: 311 MTSLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRLNDRGNYAVNVAPRSQEPATKKDGVIEVEHID 631 M ++R +VL GYR+LLR R VAF+GD+ L S++ +R+ F+ N+ + + K+I ++G+ + ML N+ QG+LNDRGNY+V++ P Q + IE+ H+D Sbjct: 1 MAAMRSQVLAGYRQLLRVRNVAFQGDALALEKSQEAIRMGFEANRLVSDEKEIKEHLRGVTQAVEMLQFNVLQGKLNDRGNYSVDIRPE-QADFHGGEEKIEISHMD 106
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A3M6VHL4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHL4_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.290e-15 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 317 SLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRLND-RGNYAVNVAPRSQEP---ATKKD 604 S+RR+VLGGYRRLLRA AF+ D+ L + LR F +N ++ + K++ L+KGIDE EGMLLH+I QGR + GN AV + +P A +KD Sbjct: 2 SIRRQVLGGYRRLLRASRQAFRDDAYALQQAHLTLRQNFIDNCQVTDKKQLDELVKGIDEAEGMLLHHIVQGRAKEANGNEAVRFEVKLTDPQRQAMRKD 101
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A6G0WSM7_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSM7_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.550e-14 Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 2 Query: 317 SLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRLNDRGNYAVNVAPRSQEPATKKDGVIEVEHIDGK 637 S+R +VLGGYRRL+RA F D + + + +R F N+++ + + GLIKGIDE E MLL+NI QG+ N++G Y V + + K + + E+ GK Sbjct: 5 SVRAQVLGGYRRLIRASRQTFGADKRAVVEAHKAVRAAFLENRDVKDVSALQGLIKGIDEAESMLLYNIVQGQANEQGTYQVTLTDPQKSHMRKDEELTEITPDTGK 111
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A835YM21_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM21_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.480e-14 Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 2 Query: 317 SLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRL 538 ++R V+ GYR LLR RLV FK D + ASK +L+ EF NK + + K+A L+KGI+EV+ MLLHN+ Q R+ Sbjct: 2 AMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVRI 75
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: H3GET2_PHYRM (Complex1_LYR_dom domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GET2_PHYRM) HSP 1 Score: 77.8 bits (190), Expect = 4.340e-14 Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 2 Query: 317 SLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGR 535 S+R +VLGGYRRLLRA AF+GD+ L ++ LR F N+++ + +++ GL+KGIDE EGMLLH+I QGR Sbjct: 2 SVRVQVLGGYRRLLRASRQAFRGDAYALQQARAALRENFVANRDVNDSEQLDGLVKGIDEAEGMLLHHIVQGR 74
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A7S2MBN3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBN3_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.810e-13 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 2 Query: 329 EVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRLNDRGNYAVNVAP 574 +VL GYRRLLRAR AF+GD+ + SK +R F+ N+ P +IA ++G+D+ E ML ++ QGR N GN+AV++ P Sbjct: 7 KVLAGYRRLLRARREAFRGDTLAIVKSKDAIRQGFEANRSETCPDQIAEHLRGVDQAEEMLRFHVLQGRRNQEGNFAVSINP 88
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Match: A0A425CED1_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CED1_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.290e-13 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 317 SLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPKKIAGLIKGIDEVEGMLLHNIAQGRLND-RGNYAVNVAPRSQEP---ATKKD 604 S+RR+VLGGYRRLLRA AF+ D+ L + LR F +N ++ + K++ L+KGIDE EGMLLH+I QGR + GN AV + +P A +KD Sbjct: 2 SIRRQVLGGYRRLLRASRQAFRDDAYALQQAHLTLRQNFIDNCQVTDKKQLDELVKGIDEAEGMLLHHIVQGRAKEANGNEAVRFEVKLTDPQRQAMRKD 101 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.151.1 >prot_A-nodosum_M_contig10.151.1 ID=prot_A-nodosum_M_contig10.151.1|Name=mRNA_A-nodosum_M_contig10.151.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=129bp MTSLRREVLGGYRRLLRARLVAFKGDSTMLAASKQQLRLEFDNNKEIVNPback to top mRNA from alignment at A-nodosum_M_contig10:1433328..1439018- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.151.1 ID=mRNA_A-nodosum_M_contig10.151.1|Name=mRNA_A-nodosum_M_contig10.151.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5691bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1433328..1439018- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1433328..1439018- >mRNA_A-nodosum_M_contig10.151.1 ID=mRNA_A-nodosum_M_contig10.151.1|Name=mRNA_A-nodosum_M_contig10.151.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1433328..1439018- (Ascophyllum nodosum dioecious)back to top |