mRNA_A-nodosum_M_contig1.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.26.1
Unique NamemRNA_A-nodosum_M_contig1.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:385251..387974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866319.3052025-UTR-A-nodosum_M_contig1:385250..3853101680866319.3052025-UTR-A-nodosum_M_contig1:385250..385310Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 385251..385310 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866320.454726-CDS-A-nodosum_M_contig1:385310..3853281680866320.454726-CDS-A-nodosum_M_contig1:385310..385328Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 385311..385328 -
1680866321.4378452-CDS-A-nodosum_M_contig1:387887..3879741680866321.4378452-CDS-A-nodosum_M_contig1:387887..387974Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 387888..387974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.26.1prot_A-nodosum_M_contig1.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 385311..387974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.26.1

>prot_A-nodosum_M_contig1.26.1 ID=prot_A-nodosum_M_contig1.26.1|Name=mRNA_A-nodosum_M_contig1.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=35bp
GGSSKEPRVVPAGKDCIKHHSTRPRVRQGNTSAF*
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mRNA from alignment at A-nodosum_M_contig1:385251..387974-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.26.1 ID=mRNA_A-nodosum_M_contig1.26.1|Name=mRNA_A-nodosum_M_contig1.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2724bp|location=Sequence derived from alignment at A-nodosum_M_contig1:385251..387974- (Ascophyllum nodosum dioecious)
GGAGGAAGCTCGAAAGAACCCCGGGTGGTGCCCGCAGGGAAGGATTGCAT
TAAGCACCACAGCACTCGACCGCGAGTACGACAAGGTCAACAAGCACACC
AAAATACAGATTAACGAGCTGGCGTCCATCTACGGCAAGACCTGGCAGAC
TGACGGCTGGACGGACAAACGGGTGAGAGGTGTATGTGAGGTCGGCTATA
CTGATTTTTGGTATTTGATATTTGGCATTTGGCTATAATGTTTTATCATA
TTCATTAAATCTTAAATCCTGCTTCGTTTATCGTGCTTCGAAGTATGCAG
CAGCACTGCTGTATCGGGTTCATTGGTACTGTATATTGTATATTGTATAT
TGTATGATGTACCAAGTATCATTCGTGTATGATCGTGTGAAATAAGCAGA
AGTATGATTTTTGCGTTTTCCATTGACCAGGTCGAACAACGAATGCATTT
CGTTTTTTCATCTTTTCGCACCTCAGGGCACGCCGCACACAAACCACATC
GAATCTACAGACGGGGTCGAGCGGTTCGTCGTGGCGCACGACTGCTCAGG
GCACAAAAGATATGGCTTTCCTCGCGGACCAGATCAAGCCGTACATGGAC
CGCGACACGGATGTAGTGATGGCGGATGGCGCGTGTGCAGGAATGCTGAA
GATCCTCGAGCGCCTGTTCCCATGGTAAGGCGATCAACCGATTCTCTCTT
TTTCGTTCCTCTTTGATCTATGCATTGCTGTCTGGTTTGCGTTATATTTT
TGCGTTGTGATTTGTCTGTCTGCATAGACACGTTGACTGCACCCTCTGCC
GCTTTACGCTTTTAAGCTTTAAGCATGTACAGCAGTTCCTAATCTCGACG
CGCGGTGCTTGTCTACCCCCCGCCGTTGCTCTTGTGCAGGTTGACAGGCA
TGAAGTGTTGCGCACACGCAGTCGACCTCCTGATGAAGGACATCGCGAAG
CAGCCGTGGGCTGCGGACATCATCAAGCGCAACCTCGAAGTCATTAAGTT
CGTCAAGAACCACCACTTCACCAGCGCTCTCTTCCGCACGAAGACGGGCC
TGTCACTCGTAACGCCCAATGCCACACGGTTTGCGACCAACCTCATCTCC
GCCATGCGCACCTTGAAGGTGAGGGTTGCTGATCTCTATCTTTCACACTT
CTTGTTTCATTTTGTGTACTCGTGAGGTTTTATGCACGAAATGTATTGCT
CATTGGGATACCTGATAGATGTACGGGTTTTTTGTTTTGTTTTTTATGTT
CACCATACGAATACAAGCGCAAGCGTACACAAAATAAAATATTAAAGTAC
AAGTAAAGTTGAAATAATAACAGCAGTATAATAACATACCAAGCATTAAT
CGTGACGCATCCATGGTGTATGTGCTTCGTGTGCGTTGTCAAGGTGGCGC
TCCCGCTGCAAAACTTTGCTAACGACCCGGCGCTGCAGGAGTACCTCAAG
AATGCGTCGCCGTCTATTCGTGCAGCGGGAAGGAAGGCGATCAGCGAGTT
GAACGAGAAGGACGACGTCCAGGGAAGTTCTGGTTCGAGGTTCGCTTCTT
CGTGAAGATGATGGAGGTATGCTACACCTTGCTCCGCATGGCGGATGGCA
CCAAGCCCTGCATGTCCAAGTTCTTCAACGGCATGCTCAGCATGCCGGCC
GCCTGGGACGCCGTGATAGCGGCGCAGGTAGTGAAACCAACGCCATCGAG
GACGAGGGCTTCAACGACCCCGAGGTGCGCGCGCGACTGGGTCCTATGAA
GGAGAGACTCCAGGATCGCCGGGTGTACATGCACTCTCCCATGCTGGGGG
CCGCGTTCGCCATCGATCCGGAGTTCCGTAAAGTCGACTTGCTCTCGGTA
GACGGCGGTGGGGTCTTGAACGACTTCAAGACCATGTGCACGCGCATCTT
GATCGACTTCAAAGATGACGAAGACCCGGAGGTGACGATCGCCGAGTCGG
AAAGCCTGCCAGATGGGGGCCGGTGGGGCGGGCCCTAGCTCAGTTACCTC
GGTTCAAGAACAAGGACTGGGGTGGTGCCGCCTTTCTGCCTTCAGCCAAG
AGCATGTCGGTGGCCAGCTGGTGGCAACAATACGGGCGCATGGATGGCTT
CGATGAAATCGCCAAGGTGGCCGTCCGGTGCAACTCCAAGATCCCCGCAT
CAGCTGGATCAGAGCGCAACTGGAGCCTGTTCGGGGTACGTGGTTTCACG
TCTCACGCAGTATGCTTTGCTGTCTGCTGTTTTCTTATCTTGTATTTGTT
TCTTTTCGTTTCTGTGTCTTGCTTCTTTCCTGCCGACTCGCCACATGCTG
TCTGTCTGCTGTCACAAATACACAAAAACACATGAAACATTAACCAACAC
TGTCCTTTGCACGTTAATGCAGACGTCATGGGAGGTCGGCACGCTCGCTT
GGGCGCTGATAAGGCAAAGAAGCTGGTCTTCGTGCGGGCCAACTTGAAGC
TGCTCGCCAATGACTACACCAAGCGGCCATTCATCGCGTGGGATCCAGAC
TCTGTAGAATCAGACGGTTTCCTCGGAAGCGGGGAGGGCGAGGACGACCC
TGACTTCGAATAGAGTGTAGTATTGTACCTTTGTTCTTCAGTTGTACTTG
AGACTTTAGTAACTTCATATACTTTTTGTTTTTGTTTTTGGTCCGTAATA
CTTCAGCGTTTTAATTTGGGTTGAACACGCATGGCTCTCGGTTTCTGTTT
GACGCTTTGAACTTTGGACGCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:385251..387974-

>mRNA_A-nodosum_M_contig1.26.1 ID=mRNA_A-nodosum_M_contig1.26.1|Name=mRNA_A-nodosum_M_contig1.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=105bp|location=Sequence derived from alignment at A-nodosum_M_contig1:385251..387974- (Ascophyllum nodosum dioecious)
GGAGGAAGCTCGAAAGAACCCCGGGTGGTGCCCGCAGGGAAGGATTGCAT
TAAGCACCACAGCACTCGACCGCGAGTACGACAAGGTAATACTTCAGCGT
TTTAA
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