mRNA_A-nodosum_M_contig1.170.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.170.1
Unique NamemRNA_A-nodosum_M_contig1.170.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:2093375..2093862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size461
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866322.1393137-UTR-A-nodosum_M_contig1:2093374..20935391680866322.1393137-UTR-A-nodosum_M_contig1:2093374..2093539Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 2093375..2093539 +
1680866322.170941-UTR-A-nodosum_M_contig1:2093800..20938621680866322.170941-UTR-A-nodosum_M_contig1:2093800..2093862Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 2093801..2093862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866322.1482716-CDS-A-nodosum_M_contig1:2093539..20936371680866322.1482716-CDS-A-nodosum_M_contig1:2093539..2093637Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2093540..2093637 +
1680866322.158621-CDS-A-nodosum_M_contig1:2093664..20938001680866322.158621-CDS-A-nodosum_M_contig1:2093664..2093800Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2093665..2093800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.170.1prot_A-nodosum_M_contig1.170.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 2093540..2093800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.170.1

>prot_A-nodosum_M_contig1.170.1 ID=prot_A-nodosum_M_contig1.170.1|Name=mRNA_A-nodosum_M_contig1.170.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp
MAKGERGVQTTCGLRSPGSGGGGVEGSWSRGGGGGLFDRRAYKVPVLFYQ
VYLNAIFASIIVVGTESVKTEGVAVRA*
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mRNA from alignment at A-nodosum_M_contig1:2093375..2093862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.170.1 ID=mRNA_A-nodosum_M_contig1.170.1|Name=mRNA_A-nodosum_M_contig1.170.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=488bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2093375..2093862+ (Ascophyllum nodosum dioecious)
CGGCAAGCGCAAGCTCCGGGCGCCTTCTCGTGTAGAAAAGGATGTACGCC
TGGGCTGATGCCACTTGTCGTCGACTGACCTGTGCGGTGACCGCCCCCAA
AGAAATTTTGTTTGAGCGTGCGCAAACACAGCCAGCGCCGATCCCATCCG
CAAACGTCACGCACGATGGCCAAGGGAGAGCGCGGTGTACAAACAACATG
CGGGTTACGATCCCCGGGGAGCGGGGGGGGGGGAGTTGAAGGGTCATGGT
CCCGGGGTGGCGGGCCACATCTAATCTGTGGAAGTCGCAGCGGAGGATTG
TTCGATAGGAGAGCTTATAAGGTACCGGTACTTTTCTACCAGGTATATCT
CAATGCCATTTTTGCATCCATCATAGTCGTCGGCACCGAATCGGTGAAAA
CCGAGGGTGTTGCCGTCCGGGCATAGCCTGTATTGGGGGCCGTATCGAGG
CGAATGTAGGCGACCGGATCAACCTCGCAAGACAGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:2093375..2093862+

>mRNA_A-nodosum_M_contig1.170.1 ID=mRNA_A-nodosum_M_contig1.170.1|Name=mRNA_A-nodosum_M_contig1.170.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2093375..2093862+ (Ascophyllum nodosum dioecious)
ATGGCCAAGGGAGAGCGCGGTGTACAAACAACATGCGGGTTACGATCCCC
GGGGAGCGGGGGGGGGGGAGTTGAAGGGTCATGGTCCCGGGGTGGCGGCG
GAGGATTGTTCGATAGGAGAGCTTATAAGGTACCGGTACTTTTCTACCAG
GTATATCTCAATGCCATTTTTGCATCCATCATAGTCGTCGGCACCGAATC
GGTGAAAACCGAGGGTGTTGCCGTCCGGGCATAG
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