mRNA_A-nodosum_M_contig1.154.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.154.2
Unique NamemRNA_A-nodosum_M_contig1.154.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: D7FT60_ECTSI (Nitroreductase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT60_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 2.120e-125
Identity = 195/259 (75.29%), Postives = 218/259 (84.17%), Query Frame = 2
Query:  254 DSDAGAFERITLARRATKRFERR-PVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGWPKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLGKPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSKAERDFKTLRFAPEEVFHRDEFGTTLEGVPVL 1027
            DSDA AFER+TLARR+TK F+RR PVPD VLKKVL LVLRAPSGFNIQPYEC+VVTSDEAK KLS+AMLG N++RVL AGATVVFASDLNSM+NV+KL T+L KEGWP+ FIK   LYLSVFSTGH+RL RLPLV AK++SFA+  RLGK MPTV+GAE WAFK+TMLAVQ          ELLLAATS G+A+CPMEGFDMRRLR+ L IPLRYSVPIVVS+GYPS   R+ KTLRF PEEV HR+EFGT LEGVP L
Sbjct:   69 DSDAEAFERVTLARRSTKHFDRRRPVPDDVLKKVLALVLRAPSGFNIQPYECIVVTSDEAKHKLSRAMLGPNRERVLAAGATVVFASDLNSMKNVRKLTTMLAKEGWPEGFIKKVPLYLSVFSTGHNRLLRLPLVAAKKLSFAVVRRLGKGMPTVSGAEAWAFKSTMLAVQ----------ELLLAATSHGLATCPMEGFDMRRLRKALRIPLRYSVPIVVSIGYPSDDRREIKTLRFPPEEVLHREEFGTPLEGVPSL 317          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A835Z5B9_9STRA (Nitroreductase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B9_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.610e-70
Identity = 122/245 (49.80%), Postives = 172/245 (70.20%), Query Frame = 2
Query:  269 AFERITLARRATKRFERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGWPKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLGKPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSKAERDFK-TLRFAPEEVFHRDEFG 1000
            AF+ I+ AR A K F   PVP  VL+ +L + LRAPS FN+QPY+ +V+ S ++KQ LSKAML  N++RVLDAGATVVFA+D N M+++ K+  + ++ G    F++   LY++VFS+GH+R+ R  +   K+V F+IA RLG  +P V  AE WAFKNTMLAV+A           +LAA + G+A+CPMEGFD R+LR++  IP RYSVP+VVS+GYP  ++R  K + RF PE+VF+ +++G
Sbjct:   14 AFKAISDARYANKEFSPEPVPAEVLQDLLQVTLRAPSAFNVQPYKALVINSPQSKQLLSKAMLSTNKKRVLDAGATVVFAADKNCMKDIGKVVDMFKEGGSNAAFVRKIPLYVAVFSSGHNRVLRPIMTFIKQVVFSIARRLGLELPPVNSAEAWAFKNTMLAVEA----------FMLAAAANGLATCPMEGFDPRQLRKQFHIPRRYSVPVVVSIGYPKPSDRPLKQSRRFPPEQVFYDNQWG 248          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A6H5L6J9_9PHAE (Nitroreductase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J9_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.930e-54
Identity = 96/137 (70.07%), Postives = 108/137 (78.83%), Query Frame = 2
Query:  551 LLEKEGWPKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLGKPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSKAERDFKTLR 961
            +L +EGWPK FI    LYLSVFSTGH+RL RLPLV AK++SFA+  RLGK MPTV+GAE WAFKNTMLAVQ          ELLLAATS G+A+CPMEGFDMRRLR+ L IPLRYSVPIVVS+GYPS   R+ KTLR
Sbjct:    1 MLAEEGWPKGFINKVPLYLSVFSTGHNRLLRLPLVAAKKLSFAVVRRLGKGMPTVSGAEAWAFKNTMLAVQ----------ELLLAATSHGLATCPMEGFDMRRLRKALRIPLRYSVPIVVSIGYPSDDRREIKTLR 127          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A6V1NJ53_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NJ53_HETAK)

HSP 1 Score: 176 bits (447), Expect = 6.050e-48
Identity = 96/244 (39.34%), Postives = 149/244 (61.07%), Query Frame = 2
Query:  272 FERITLARRATKRFERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLG-ENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGWPKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLGKPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSKAERDFK-TLRFAPEEVFHRDEF 997
            F  + + RR+ ++F   P+PD  +  ++ L  RAPSGFN+QPY  V+V S+E K+ L+ AMLG  N++RVL+A  T VFASDL ++++V+++  LL  +G PK  +      L++FS GH  L RLP ++ ++++F     +    P V+  ETWA KNTMLAVQ            +LA+ + G+ + PMEG+D RR+RR L +P R++VP+VV+ GYP   + +   + R+  + V   D F
Sbjct:   76 FREVVMGRRSVRKFLPNPIPDETMDHIIDLTQRAPSGFNVQPYVIVLVKSEETKRALADAMLGASNKRRVLEAPVTAVFASDLENLRHVRRVEGLLRAQGLPKAAVDLARPGLTIFSGGHRALLRLPSLIVRKLAFRPVSLI-TASPKVSTPETWAVKNTMLAVQ----------NYMLASVAYGLNTAPMEGYDARRVRRALKLPRRFTVPLVVATGYPGDLDEEAAPSARWPRDRVVFSDRF 308          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A6G0XIZ5_9STRA (Nitroreductase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIZ5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 7.760e-41
Identity = 97/247 (39.27%), Postives = 133/247 (53.85%), Query Frame = 2
Query:  263 AGAFERITLARRATKRFERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGWPKEFIKSFSLYLSVFS-TGHSRLFRLPLVVAKRVSFAIAGRLGKPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSKAERDFKTLRFAPEEVFHRDEFG 1000
            A AF  +   RR+  +++ +P+P  +L+ VL    RAPSGFN+QPY CVVV   + + +LS AMLG+N ++V DA    VFASDL   + V  ++ L+E  G     I    + L  F   GH       L    R   + A    + +PT A    W++K+TMLAV             +LA  S G+ +C MEGFD  RLR  L IP RYSVP+VV+ GYP ++ +   TLR  P EVF   +FG
Sbjct:    2 AQAFRALARQRRSVYQYQNKPIPKEILEDVLQTTQRAPSGFNLQPYACVVVQDPDERAQLSTAMLGDNIRKVKDAPLVAVFASDLEPSKRVPAIQQLMETAGQSTADIHQLPMKLRFFGGEGH-------LAGLIRSGISAAFTPFQAVPTYAPTIAWSYKSTMLAVT----------HYVLALESHGIGTCVMEGFDETRLRHALDIPDRYSVPVVVTAGYPVESTKPL-TLRLDPNEVFFDGKFG 230          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A3R7NF45_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NF45_9STRA)

HSP 1 Score: 155 bits (393), Expect = 9.060e-41
Identity = 102/279 (36.56%), Postives = 147/279 (52.69%), Query Frame = 2
Query:  200 LRLAPARPLAKVPKVGVRDSDAGAFERITLA---RRATKRFERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGWPKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLG--KPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSKAERDFK-TLRFAPEEVFHRDEFGTTLEGV 1018
            L L+P     +   +  R S + A +++  A   R A K F   PVP+  L+++L L LRAP+GFN QPY CVVV     ++KL++AM+  N ++V +A   VVFA+D    + V +L+ L    G   + + +    + +FS G         V A  +  AIA  +   +P P+    E WAFK T  A             LL AA   GVA+CPMEGFD  R+R  L IP RY +P+V++LGYP+ A    K ++R  P EVF   +FG + EG+
Sbjct:    3 LHLSPCTRFLRRSALQARWSSSSAQKKLGAAIQDRYACKAFLPDPVPEQTLQEILKLTLRAPTGFNTQPYACVVVRKQADREKLAEAMMASNVRKVKEAPVVVVFAADCEPTKRVPRLQKLAADNGASTDLVNNLPHVVRLFS-GEG-------VAASGIRAAIATAVSPLQPAPSNVSTEAWAFKQTTFAAAT----------LLYAAQEHGVATCPMEGFDQIRVRNALDIPDRYGIPVVIALGYPNPATAPTKPSVRLQPTEVFFDGKFGQSSEGI 263          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A4D9DF56_9STRA (Nitroreductase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DF56_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.180e-40
Identity = 98/265 (36.98%), Postives = 148/265 (55.85%), Query Frame = 2
Query:  269 AFERITLARRATKRFE-RRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTL-LEKEGWPKEFIKSFSLYLSVFS-TGHSRLFRLPLVVAKRVSFAIAGRLGKPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPL-RYSVPIVVSLGY--------PSKAERDFKTLRFAPEEVFHRDEFGTTLEGVPVL 1027
            AF+R  LAR +TK F+ +R + D  L  +L L LR P+ FN+QPY   +V S++ KQKL+  MLG N  RVL A  T VFA+DL+ +Q V ++++L   K G P+ ++ +    ++  +  GH       L  A +  F  A    +PMP+V+  E W++KNT +A              +L+ +  G+ +CPMEGFD RR+  EL IP  RY++P+VVS G+        P + E   K+ RF PE V  +D++G   +G+  L
Sbjct:   75 AFKRAVLARHSTKAFDAKREIADETLAAILALTLRCPTSFNVQPYTVTIVQSEDMKQKLAACMLGPNSARVLQAPVTAVFAADLDPVQLVPRVQSLERRKRGLPEAYLATLPFSVAFLAGKGH-------LAHAFKDLFTTAMSPLQPMPSVSTLEAWSYKNTAIAAS----------WYMLSCSVHGLDTCPMEGFDGRRIMHELHIPASRYAIPLVVSTGFAMPLPSSSPERNEEAKKSPRFPPEAVVFKDQYGHAYKGISQL 322          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A6A3XAN9_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XAN9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.040e-38
Identity = 92/245 (37.55%), Postives = 134/245 (54.69%), Query Frame = 2
Query:  293 RRATKRFERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGWPKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLG--KPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSKAERDFK-TLRFAPEEVFHRDEFGTTLEGV 1018
            R A K F    VPD  L+++L L LRAP+GFN QPY CV+V   + ++KL++AML  N ++V +A    VFA+D    + V +L+ L    G P +F+ +   ++ +FS G         VVA+ +  AIA  +   +P P+    E WA+K    A              L AA   G+A+CPMEGFD  R+R  L IP RY VP+V++LG+P+ A +  K + R  P EVF   +FG + E +
Sbjct:   44 RYACKAFLPDAVPDKTLQEILKLTLRAPTGFNTQPYACVLVREQKDREKLAEAMLDSNARKVKEAPVVAVFAADCEPSKRVPRLQKLAHDNGAPVDFVSNLPHFVRLFS-GEG-------VVARGLRAAIATAVSPLQPAPSNVSTEAWAYKQATFAAAT----------FLYAAQEYGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHPNPAAKPKKPSARLDPTEVFFDGKFGDSSEEI 270          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: A0A4D9D236_9STRA (Nitroreductase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D236_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.830e-38
Identity = 101/272 (37.13%), Postives = 148/272 (54.41%), Query Frame = 2
Query:  263 AGAFERITLARRATKRF-ERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLS-KAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEG-WPKEFIKSFSLYLSVFSTGHS-RLFRLPLVVAKRVSFAIAGRLGKPMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPS----------------KAERDFKTLRFAPEEVFHRDEFGTTLEGV 1018
            AG F +I  +R +   +   +PV    L ++L L  RAPS FNIQP++ VV+     + K++ +AMLG N  RV  A  TVVFA+D+ S + + ++  LL + G +P+ F+     + ++FSTG+   L R  L   KRV+  + G   K +P +   ETWA KNTMLA              +LAA+S  + +CPMEGFD RRLR  LG+P RY +P+VVSLGY +                 +++   +LRF  EEV   + +G   +GV
Sbjct:   22 AGPFSQIVHSRFSNTHYASHKPVHISTLNELLRLTQRAPSSFNIQPFKLVVIRDPTLRDKIAHQAMLGANGNRVRTAPVTVVFAADVESSRLMPQVVALLRQAGTFPEGFLNKIPFFANLFSTGYPFSLLRWCLYWGKRVAMHVVGWF-KAVPRLERPETWAVKNTMLAAMT----------FMLAASSHSLTTCPMEGFDARRLRHLLGLPTRYVLPVVVSLGYAATPGEEAAQGGKEGHAVSSKQPPPSLRFPMEEVVCEEAYGRPWKGV 282          
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Match: W2YM79_PHYPR (Nitroreductase domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=W2YM79_PHYPR)

HSP 1 Score: 149 bits (375), Expect = 2.120e-38
Identity = 91/245 (37.14%), Postives = 135/245 (55.10%), Query Frame = 2
Query:  293 RRATKRFERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTSDEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGWPKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLGK--PMPTVAGAETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRRELGIPLRYSVPIVVSLGYPSK-AERDFKTLRFAPEEVFHRDEFGTTLEGV 1018
            R A K F   PVP+  LK++L L  RAP+GFN+QPY CV+V   + ++KL++AM+  N ++V +A    VFA+DL   + V +L+ L+   G P +F+ +    + +FS G         VVA  +  AIA  +    P P+    E WAFK T  A              L AA + G+A+CPMEGFD  R+R  L IP RY VP+V++LG+ +  A+ +  + R  P E+F   +FG + E +
Sbjct:   33 RYACKAFLPTPVPNETLKEILRLTQRAPTGFNVQPYACVLVREQKDREKLAEAMMDSNIRKVKEAPVVAVFAADLEPSKRVPRLQHLMHDNGAPADFVANMPHVVRLFS-GEG-------VVASTLRAAIATAVSPLMPAPSNVSTEAWAFKQTAFAAAT----------FLYAAQTHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHANPDAKPEKPSARLDPTEIFFDGKFGNSSEKI 259          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.154.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT60_ECTSI2.120e-12575.29Nitroreductase-like protein n=1 Tax=Ectocarpus sil... [more]
A0A835Z5B9_9STRA1.610e-7049.80Nitroreductase-like protein n=1 Tax=Tribonema minu... [more]
A0A6H5L6J9_9PHAE4.930e-5470.07Nitroreductase domain-containing protein n=1 Tax=E... [more]
A0A6V1NJ53_HETAK6.050e-4839.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0XIZ5_9STRA7.760e-4139.27Nitroreductase domain-containing protein n=1 Tax=A... [more]
A0A3R7NF45_9STRA9.060e-4136.56Nitroreductase domain-containing protein n=3 Tax=P... [more]
A0A4D9DF56_9STRA1.180e-4036.98Nitroreductase domain-containing protein n=2 Tax=M... [more]
A0A6A3XAN9_9STRA1.040e-3837.55Nitroreductase domain-containing protein n=3 Tax=P... [more]
A0A4D9D236_9STRA1.830e-3837.13Nitroreductase domain-containing protein n=3 Tax=M... [more]
W2YM79_PHYPR2.120e-3837.14Nitroreductase domain-containing protein n=5 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:2041221..2044743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT60
PFAMsNitroreductase
Model size1278
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue2.85e-128
EggNOG OGsCOG0778@1|root,2RZ0D@2759|Eukaryota
Ec32 ortholog descriptionnitroreductase-like protein
Ec32 orthologEc-19_003470.1
DescriptionNitroreductase family
Cds size909
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.154.2prot_A-nodosum_M_contig1.154.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 2041342..2044495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866345.425522-UTR-A-nodosum_M_contig1:2041220..20413411680866345.425522-UTR-A-nodosum_M_contig1:2041220..2041341Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 2041221..2041341 +
1680866345.4906292-UTR-A-nodosum_M_contig1:2044495..20447431680866345.4906292-UTR-A-nodosum_M_contig1:2044495..2044743Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 2044496..2044743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866345.437161-CDS-A-nodosum_M_contig1:2041341..20415691680866345.437161-CDS-A-nodosum_M_contig1:2041341..2041569Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2041342..2041569 +
1680866345.4464417-CDS-A-nodosum_M_contig1:2042391..20425161680866345.4464417-CDS-A-nodosum_M_contig1:2042391..2042516Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2042392..2042516 +
1680866345.4542055-CDS-A-nodosum_M_contig1:2042840..20429121680866345.4542055-CDS-A-nodosum_M_contig1:2042840..2042912Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2042841..2042912 +
1680866345.4624658-CDS-A-nodosum_M_contig1:2043369..20436161680866345.4624658-CDS-A-nodosum_M_contig1:2043369..2043616Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2043370..2043616 +
1680866345.473307-CDS-A-nodosum_M_contig1:2043933..20441001680866345.473307-CDS-A-nodosum_M_contig1:2043933..2044100Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2043934..2044100 +
1680866345.4828668-CDS-A-nodosum_M_contig1:2044425..20444951680866345.4828668-CDS-A-nodosum_M_contig1:2044425..2044495Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 2044426..2044495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.154.2

>prot_A-nodosum_M_contig1.154.2 ID=prot_A-nodosum_M_contig1.154.2|Name=mRNA_A-nodosum_M_contig1.154.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=303bp
MILSRVWVLLSALGVSCSFEPAVARGLRLAPARPLAKVPKVGVRDSDAGA
FERITLARRATKRFERRPVPDVVLKKVLGLVLRAPSGFNIQPYECVVVTS
DEAKQKLSKAMLGENQQRVLDAGATVVFASDLNSMQNVKKLRTLLEKEGW
PKEFIKSFSLYLSVFSTGHSRLFRLPLVVAKRVSFAIAGRLGKPMPTVAG
AETWAFKNTMLAVQASQSRQSSSEELLLAATSCGVASCPMEGFDMRRLRR
ELGIPLRYSVPIVVSLGYPSKAERDFKTLRFAPEEVFHRDEFGTTLEGVP
VL*
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mRNA from alignment at A-nodosum_M_contig1:2041221..2044743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.154.2 ID=mRNA_A-nodosum_M_contig1.154.2|Name=mRNA_A-nodosum_M_contig1.154.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3523bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2041221..2044743+ (Ascophyllum nodosum dioecious)
CAGGCGGCATTTCTCACAGCTTACCTACAGCAGGAGGTGGGTGCTACAGG CTGGGTGCTACAGGCTGCTCCGCACAGCCCGCTTTTGACTCGCCGTGATC CGTGTGGACCTTACCTACCCCATGATTCTCTCTCGAGTGTGGGTTCTCCT TTCAGCCTTGGGGGTATCATGCTCCTTCGAGCCAGCTGTCGCTAGAGGCC TTCGTCTAGCCCCCGCACGGCCGCTAGCGAAGGTGCCGAAGGTTGGAGTT CGCGACAGCGACGCGGGCGCGTTCGAGAGGATAACGCTAGCGAGGCGCGC CACGAAGCGGTTCGAACGGCGACCTGTGCCGGACGTCGTCCTTAAGAAGG TTCGACCGTGACGACCCCTTGTCGTATCCCTTCGAGCAACTTACGAACCA ATGCTGCATTGAGCCGTGTGTCTCTCTTAGCAAGAGCAAGCTCGAAAGCG CCACGAGCTACGTATGACCCCAGGCCTCGATTACGTGCGGAACAGCGAAA TAGAAGGTACCGCACGATTATCTGTAGCTGCAAGTTGCTGTACATCTTCT CGGACAGTTTCAATTTTTTGCTTTCTTTATAATAGTCAGTATTGTCAATC GCTCACTACACCCGCAAAAATGGATAGGATGTGTCTGGGGCTATTCAATA ATACTTACCAGATGTTCTAATAATAATTGATTCTAACAGTGCTTCTCTTC TGTATTTTTACAAAAAAACAATGATATTTTAACAGCCCAGCTTATTTTGA CCTATGGATCATGTTGTAGACGTTAAAACCCCCGGTGCGCTGACTTGACC TGTACCTCGTACGTACACACTACAAAACCGTAGAAGCATTGAAAACGCCT GCCGCTGAACTGTACCACTCGTGGCAAAGACCAAAATATGTATATCTCGA GAAAGTAACCTGTTGTTGACACGGGGATCGGGCAGAGCGTTTTGGAGCTA ATCGGGATCGGGACGGCGGCACCCCGTGTTTCGTCTCGAACAAGTTACCA GTACTAGTTTAGAGTAAAGCACTGTCAGCGACGTCTTCGGTGGAATCCGG TGATAAAAACAGTATAGTATGTAAATGTGTGTAACCGTAAAGCTCCACTC TATGCAGCAGAGCATAACATAAATGAGTGCAGTAGCTCTAACAACCGAGA CCGGCGAATCAAGCTTAGCAGGTGTTGGGGTTGGTCTTGAGAGCACCTTC CGGCTTCAACATCCAGCCATACGAATGCGTTGTGGTTACTTCCGATGAGG CCAAGCAGAAGCTCAGCAAGGCCATGTTAGGCGAAAATCAACAGAGGTGA AACGCTCGAGATTGTTAGCTGGGAAAAAATACACTCCTTTCGCGAGCTCT CGCTGCCCTCTCGTGGCACCAAAGCCATGTGCGTGGCGGCGGTGTTTGCT GTCCTATCGAGCCTCAGCTAAAATTATTTCGCACGCTGTTGTGGTGAGAA ATTCCCCCTTGACGCCTTCTTTCCAGCGTGGAACCACCGAAAGCCTTCGA AGGCCTTCTAAACCCCTCTAAACCTTCTAAACCCTTCTAAACCCTTCTCT GACGTTCGAAGCGCGTGCGTGCACCCGTATCCTAATTATCTGCCTGCCAT CCCCGACATGCCCAATTCAGGGTTCTCGACGCTGGAGCGACGGTGGTGTT CGCCTCCGACTTGAATAGCATGCAAAACGTCAAGAAATTGAGGTGAGCTG TCCCATTTGAATGAAAAATGACAACAGTTGTATTTTCTTCAATCCACAGC CCCTTTGACGAACTCTCACAGCCCTGATGAAAGATAGTATAGACTAATGG CGTAACGATCCGCACCGCGCGTGAAGCGTCGCGAGTGACTCTTAGGGCGG CAGATGTGAAAAAGATGCGGTACGCCAAATAATCACGCAAGTTGCTTCGA CGGCAAATGACCTTGCGCGCCATCTCGCGAAAGCGGTACAGTCGAGGTCC CGATATAGCGGTACTTTGCCCTTCATTGTCGTACCCTCGCTATATCGGGA CCTCGACTGTGTGCTCACACACGGGCACATCTCTGAACGGCCCCCAGAAG CTTCTGCTCGACGTAACGTCGCGTTATCTTTTTGCCGCGTGTCCGGTAGA GACATTCATTCATTGCTCTAAACCCCTCCCGCCCCCGACCTGTCTCCAGG ACTTTACTCGAGAAAGAAGGGTGGCCGAAGGAGTTCATAAAGAGTTTTTC GCTGTACCTCTCCGTGTTCTCCACGGGGCACAGTCGGCTGTTCCGGCTCC CTCTTGTGGTGGCAAAGAGGGTGTCCTTCGCGATTGCTGGGAGGCTGGGG AAGCCCATGCCCACCGTGGCAGGGGCGGAGACGTGGGCATTCAAGAACAC GATGCTGGCTGTGCAGGCGAGCCAGAGTAGACAATCATCTAGTGAGGTAG CTCTTCCCTGCTTCGGCATGCTTGCTAATTAATGCCCTCAAGTGACGCAA CTTTTTTTTTTTCCTTTTTTTTTTGGTGAGGAGGAGGAGCGCGGGGCTAC TTTTTCAAGTATCACCTGTTACCGACAACGCCTTGCCTTACCGAAACTTC CTCCTGGCGTCAAGGTTTCTTTCATGACGTCAGCACCCCCTCGCGAAAGC TACAGGCGAGCACGCGCACGCGAGCACGAGCACGAGCGCCTCTCGTCTAT AATAGCTCTCTATAGCTAACGACCTGATCTGCACCCCTTCCCCCCCCCTT ccccccCCCCCAGGAGCTTCTTCTCGCCGCGACTTCCTGTGGGGTCGCTT CGTGTCCAATGGAGGGGTTCGACATGCGGAGATTGCGCAGGGAGTTGGGC ATCCCGCTGCGATATTCGGTGCCGATCGTTGTCAGCCTAGGCTACCCGTC GAAGGCGGAACGAGACTTCAAGACGCTCAGGTATATAACGCGACAGAGAC AGAAACGAGGAGGGTAAAGGAGTGAGGAGTCAGTGTGTCAGTGCATGTCA GTGTGTGTATGCGTGGTGGGGCGGGGCGGGGGAGTCGTGCTAATAAGGAG TTGTCGTCCTGGACCCACGTAACGCCAGCTGCGAATTGACCTGTCCTGGT TGTGTATTTCATCTCGACGCATGGGAGAAACGCGAAAGATGGCCTTCGAG TGTAGCACCTGCACGATCAGGTTTTTGCGATCCCGCAATCGCCGATAGAG GGTAACATTGACTCGACTGATCGGACTCATCGCGTCGCTAAATGTGAAAT GACAGGTTCGCTCCCGAGGAAGTCTTCCACCGAGATGAGTTCGGCACCAC CCTGGAAGGCGTGCCTGTTCTCTGATCTCTGATTTCAAGCCCTTTGGTCG TTTACTCTCAGCAGTATTAATATCTGTTGTTGTTGACTGCGTAGTTTATA CGTTACTCTACGGCGGTTTAGAGCGCTCTATGCAGTACAATCTGTAGGAG GGTAGGTTCCGAGAGAAGGAAATTGAAACTACGGTTTTGTTTCCTTCGAT ACGATGTGCGTTGATCACACCAACTCTAGGTGCAAGTAATATTCGTTTAT TCGTTGAAGGGATAATCGTTTGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:2041221..2044743+

>mRNA_A-nodosum_M_contig1.154.2 ID=mRNA_A-nodosum_M_contig1.154.2|Name=mRNA_A-nodosum_M_contig1.154.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=909bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2041221..2044743+ (Ascophyllum nodosum dioecious)
ATGATTCTCTCTCGAGTGTGGGTTCTCCTTTCAGCCTTGGGGGTATCATG
CTCCTTCGAGCCAGCTGTCGCTAGAGGCCTTCGTCTAGCCCCCGCACGGC
CGCTAGCGAAGGTGCCGAAGGTTGGAGTTCGCGACAGCGACGCGGGCGCG
TTCGAGAGGATAACGCTAGCGAGGCGCGCCACGAAGCGGTTCGAACGGCG
ACCTGTGCCGGACGTCGTCCTTAAGAAGGTGTTGGGGTTGGTCTTGAGAG
CACCTTCCGGCTTCAACATCCAGCCATACGAATGCGTTGTGGTTACTTCC
GATGAGGCCAAGCAGAAGCTCAGCAAGGCCATGTTAGGCGAAAATCAACA
GAGGGTTCTCGACGCTGGAGCGACGGTGGTGTTCGCCTCCGACTTGAATA
GCATGCAAAACGTCAAGAAATTGAGGACTTTACTCGAGAAAGAAGGGTGG
CCGAAGGAGTTCATAAAGAGTTTTTCGCTGTACCTCTCCGTGTTCTCCAC
GGGGCACAGTCGGCTGTTCCGGCTCCCTCTTGTGGTGGCAAAGAGGGTGT
CCTTCGCGATTGCTGGGAGGCTGGGGAAGCCCATGCCCACCGTGGCAGGG
GCGGAGACGTGGGCATTCAAGAACACGATGCTGGCTGTGCAGGCGAGCCA
GAGTAGACAATCATCTAGTGAGGAGCTTCTTCTCGCCGCGACTTCCTGTG
GGGTCGCTTCGTGTCCAATGGAGGGGTTCGACATGCGGAGATTGCGCAGG
GAGTTGGGCATCCCGCTGCGATATTCGGTGCCGATCGTTGTCAGCCTAGG
CTACCCGTCGAAGGCGGAACGAGACTTCAAGACGCTCAGGTTCGCTCCCG
AGGAAGTCTTCCACCGAGATGAGTTCGGCACCACCCTGGAAGGCGTGCCT
GTTCTCTGA
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