mRNA_A-nodosum_M_contig1.147.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI) HSP 1 Score: 145 bits (367), Expect = 3.700e-38 Identity = 80/155 (51.61%), Postives = 93/155 (60.00%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHPWMLPLNVIRRTTAHLPKTGGEQSEMEDWSVYLDASK----------------------------------------------TVVTVLAHLWARLLESSAEIRSAILLQRSYRSYLRRTGRGDIAERTHGAK 327
V +FTTSFADGRALCLL+HYYHP ++PLN IRRTTAHLP+ GG + E+EDWS LDASK T++TV+AHL ARLLESSAEIRS IL+QR YRS+L RTGRGD+ ER AK
Sbjct: 803 VRNFTTSFADGRALCLLLHYYHPRIIPLNAIRRTTAHLPRIGGGRGELEDWSASLDASKITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLERTGRGDLVERARAAK 957
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE) HSP 1 Score: 139 bits (349), Expect = 9.870e-36 Identity = 79/168 (47.02%), Postives = 92/168 (54.76%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHPWMLPLNVIRRTTAHLPKTGGEQSEMEDWSVYLDASK-----------------------------------------------------------TVVTVLAHLWARLLESSAEIRSAILLQRSYRSYLRRTGRGDIAERTHGAK 327
V +FTTSFADGRALCLL+HYYHP ++PLN IRRTTAHLP+ GG + E+EDWS LD SK T++TV+AHL ARLLESSAEIRS IL+QR YRS+L RTGRGD+ ER AK
Sbjct: 659 VRNFTTSFADGRALCLLLHYYHPRIIPLNAIRRTTAHLPRIGGGRGELEDWSASLDPSKEVSCCAAEVDQGCITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLERTGRGDLVERARAAK 826
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: B7FXX8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXX8_PHATC) HSP 1 Score: 72.0 bits (175), Expect = 2.790e-12 Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHPWMLPLNVIRRTTAHLPKTGGEQSEMEDWSVY--------------------------LDASKTVVTVLAHLWARLLESSAEIRSAILLQRSYRSY----LRRTGRGDIAERTHGAKTE 333
V + TT FADGRA+CLL+HYYHP +L L+ IR T+ P++ + +E+ +Y + +K+++ L+ L +RLLESS EIR+ +L+Q YR+Y LRR R + G+ +
Sbjct: 774 VRNLTTDFADGRAICLLIHYYHPALLRLSEIRPTSRFSPRSLTQVRALEN-EMYNSQLANTRMSELGGIPRIVPECDTNNVPEAKSMLLCLSFLCSRLLESSTEIRAILLIQNRYRAYRKARLRRRQRHSTTAQPSGSSND 913
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A7S3UNU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNU8_HETAK) HSP 1 Score: 67.4 bits (163), Expect = 5.050e-11 Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHPWMLPLNVIRRTTAHLPKTGG 129
V +F++SFADGRA CLLVHYYHP M+PL I +TTAHLP+ G
Sbjct: 105 VCNFSSSFADGRAFCLLVHYYHPRMIPLRQISKTTAHLPREYG 147
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A482RXF6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXF6_9ARCH) HSP 1 Score: 66.2 bits (160), Expect = 2.880e-10 Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHPWMLPLNVIRRTTAHLP------KTGGEQSEMEDWSVYLDA----------------------SKTVVTVLAHLWARLLESSAEIRSAILLQRSYRSY 276
+ D ++SFADGRALCLL HYYHP ++P IR+T HL K +E +++++ A SK V LA+ + RL +++ E+R+AI LQR R +
Sbjct: 437 ITDMSSSFADGRALCLLFHYYHPSLIPTRQIRKTCRHLSSDSTLTKDKAVMNEHKNFAMLRKACKEIGGVALPLPEPLDTFHPPESKFTVMFLAYCFMRLTDTAKEVRAAIRLQRFARKH 556
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A484EGF2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGF2_BRELC) HSP 1 Score: 62.8 bits (151), Expect = 5.000e-9 Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHPWMLPLNVIRRTTAHLPKTGGEQ--------SEMEDWSVYLDA----------------------SKTVVTVLAHLWARLLESSAEIRSAILLQRSYRS 273
++DFT+SFADG+ALC L+HYYHP +L + + TT + +T E +E + +++ D K VVT + +L +RL+ES +EI +A L+R ++S
Sbjct: 811 IHDFTSSFADGKALCYLLHYYHPMLLLKSDVLPTTCDVKETDAESVITTELLANEQQHFTLVNDRIKQLGQVPVLMPQDCNSKNPPEDKMVVTFVCYLQSRLMESCSEINAASRLKRWWQS 931
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A448Z627_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z627_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 9.360e-9 Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHPWMLPLNVI------------------------RRTTAHLPKTGGEQSEMEDWSVYLDAS-----KTVVTVLAHLWARLLESSAEIRSAILLQRSYRSYLRR 285
++D + SFA+G+ALCLL+HYYHP ++ + I RR + + + GG + D D+ K+++ L +L +RL+ESS EI +AIL+Q YR Y R+
Sbjct: 1091 ISDLSDSFANGKALCLLIHYYHPSLIRVEEIFHASLEPQPGDSTEDLLEKERINWRRASTSMQQLGG----IPDMLPICDSENPPNEKSMLLCLTYLCSRLMESSQEIFAAILIQACYRKYRRK 1210
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A397G091_9STRA (Calponin-homology (CH) domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397G091_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.130e-8 Identity = 40/115 (34.78%), Postives = 53/115 (46.09%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHP---------WMLPLNVIRRTTAHLPKTGGEQSEME-------------------DWSVYLDASKTVVTVLAHLWARLLESSAEIRSAILLQR 261
+ +FT SFADG+ALCL+VHYYHP WM R P E++ D S +L K ++T LA+L +RLL +S EI +A LQR
Sbjct: 67 IRNFTASFADGKALCLMVHYYHPQLLEKGEIQWMTSDTTTERMVTKTPLLANERANFALVNHKVKQLGQVPVLLPLFD-SEHLPEEKCILTFLAYLHSRLLGASREIHAAFCLQR 180
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A3R7YWW8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7YWW8_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.210e-8 Identity = 40/115 (34.78%), Postives = 53/115 (46.09%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHP---------WMLPLNVIRRTTAHLPKTGGEQSEME-------------------DWSVYLDASKTVVTVLAHLWARLLESSAEIRSAILLQR 261
+ +FT SFADG+ALCL+VHYYHP WM R P E++ D S +L K ++T LA+L +RLL +S EI +A LQR
Sbjct: 578 IRNFTASFADGKALCLMVHYYHPQLLAKGEIQWMTSDTTTERMVTKTPLLANERANFALVNHKVKQLGQVPVLLPLFD-SEHLPEEKCILTFLAYLHSRLLGASREIHAAFCLQR 691
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Match: A0A3R6ZP67_9STRA (Uncharacterized protein (Fragment) n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZP67_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.230e-8 Identity = 40/115 (34.78%), Postives = 53/115 (46.09%), Query Frame = 1
Query: 1 VNDFTTSFADGRALCLLVHYYHP---------WMLPLNVIRRTTAHLPKTGGEQSEME-------------------DWSVYLDASKTVVTVLAHLWARLLESSAEIRSAILLQR 261
+ +FT SFADG+ALCL+VHYYHP WM R P E++ D S +L K ++T LA+L +RLL +S EI +A LQR
Sbjct: 580 IRNFTASFADGKALCLMVHYYHPQLLEKGEIQWMTSDTTTERMVTKTPLLANERANFALVNHKVKQLGQVPVLLPLFD-SEHLPEEKCILTFLAYLHSRLLGASREIHAAFCLQR 693 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1.147.1 >prot_A-nodosum_M_contig1.147.1 ID=prot_A-nodosum_M_contig1.147.1|Name=mRNA_A-nodosum_M_contig1.147.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=118bp VNDFTTSFADGRALCLLVHYYHPWMLPLNVIRRTTAHLPKTGGEQSEMEDback to top mRNA from alignment at A-nodosum_M_contig1:2016398..2022165- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1.147.1 ID=mRNA_A-nodosum_M_contig1.147.1|Name=mRNA_A-nodosum_M_contig1.147.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5768bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2016398..2022165- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1:2016398..2022165- >mRNA_A-nodosum_M_contig1.147.1 ID=mRNA_A-nodosum_M_contig1.147.1|Name=mRNA_A-nodosum_M_contig1.147.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2016398..2022165- (Ascophyllum nodosum dioecious)back to top |