mRNA_A-nodosum_M_contig1.146.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_A-nodosum_M_contig1.146.1
Unique Name	mRNA_A-nodosum_M_contig1.146.1
Type	mRNA
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))

Homology

[Close]

BLAST of mRNA_A-nodosum_M_contig1.146.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-9
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1

Query:    4 AARWLALGRRFSRHKAASVIQATARGMAVRRTAGRRMADSRRRIAEAGERARQKPSLILGVK 189
            AARWL LGRRFSR KAA++IQA ARGMA R+  G  +A +R RI +A   A   PS ILG +
Sbjct: 2256 AARWLVLGRRFSRAKAATMIQAAARGMAARKKTGPGIASARARIEKANANALADPSQILGTR 2317

[Close]

BLAST of mRNA_A-nodosum_M_contig1.146.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.950e-8
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1

Query:    4 AARWLALGRRFSRHKAASVIQATARGMAVRRTAGRRMADSRRRIAEAGERARQKPSLILGVK 189
            AARWL LGRRFSR KAA++IQA ARGMA R+     ++ +R RI  A   A   PS +LG +
Sbjct: 2137 AARWLVLGRRFSRTKAATMIQAAARGMAARKKTDPGISSARARIERANANALADPSQVLGTR 2198

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1.146.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LLN9_ECTSI	1.160e-9	58.06	Similar to asp (Abnormal spindle)-like, microcepha...	[more]
A0A6H5KRH5_9PHAE	4.950e-8	53.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1	contig	A-nodosum_M_contig1:2011434..2013014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D8LLN9
Preferred name	ASPM
PFAMs	ASH,Arm,CH,IQ
Model size	192
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K16743,ko:K16774
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
Exons	2
Evalue	1.9e-10
EggNOG OGs	COG5022@1\|root,KOG0165@1\|root,KOG0160@2759\|Eukaryota,KOG0165@2759\|Eukaryota
Description	negative regulation of asymmetric cell division
Cds size	192
COG category	Z
BRITE	ko00000,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680866345.2452302-CDS-A-nodosum_M_contig1:2011433..2011559	1680866345.2452302-CDS-A-nodosum_M_contig1:2011433..2011559	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig1 2011434..2011559 -
1680866345.2635307-CDS-A-nodosum_M_contig1:2012948..2013014	1680866345.2635307-CDS-A-nodosum_M_contig1:2012948..2013014	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig1 2012949..2013014 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1.146.1	prot_A-nodosum_M_contig1.146.1	Ascophyllum nodosum dioecious	polypeptide	A-nodosum_M_contig1 2011434..2013014 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig1:2011434..2013014-
coding sequence from alignment at A-nodosum_M_contig1:2011434..2013014-

protein sequence of mRNA_A-nodosum_M_contig1.146.1

>prot_A-nodosum_M_contig1.146.1 ID=prot_A-nodosum_M_contig1.146.1|Name=mRNA_A-nodosum_M_contig1.146.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
VAARWLALGRRFSRHKAASVIQATARGMAVRRTAGRRMADSRRRIAEAGE
RARQKPSLILGVK*

mRNA from alignment at A-nodosum_M_contig1:2011434..2013014-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig1.146.1 ID=mRNA_A-nodosum_M_contig1.146.1|Name=mRNA_A-nodosum_M_contig1.146.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1581bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2011434..2013014- (Ascophyllum nodosum dioecious)
GTGGCCGCGCGTTGGCTTGCCCTCGGCCGGCGATTTTCGAGGCACAAGGC
GGCATCAGTGATTCAGGTGCTTTCGGACTATGATAGGGAGGATTTTCGGA
TATCGCTTGCTTTCATGCAGGAAATCACAAAAAAAAGAGACTATGAAGGA
CATAGCTTACATCGTGTCCGAATCTGGCTGTTGCTAAACTCACAATATGT
GCTTGAAAATATGGTCACTGGAAAATAGATTTCTACGGCAAAGCGCGTTG
TCAATAGTACTGTACCCCAGGCTACACATAGGCTCTACGCTTTTTCCTCA
TTTTAAGACGAAGGCTGCCGGGTAAGGTCGTCTGAATCACCGCTGGGTTA
TGGCACCAAAATGGTTATGCCGGCTCAAACCCAGATATCTGTAACTTTGC
TTTTGTCCAACTTCGCTGAGACGTGGCCATAATTCCAGCTATGTAGTGGA
AAAATAAGAACGAACGGTACGCACAATCTAGATGTTTTTGTAGAAAGTGC
TGTAGCCCGAGTATAACCAGATATTCTGGCCACCAACCCAAGTCATACCG
TATTATAACACCGTGGAGCTGGAGATTATTTAAGTCTTGCGTATTGGAGA
AACCAGACTCAAGATTCCATCGTTTTTAGCCATAGCACGACCTCTGTGTG
TGTTAGTTAGCATTCGTTATCTGTACGGGTCATGTAAAGTGTCGGCACAG
TATTTGCAGCCTAGATTTATCTGGTCAGGTTGCGTCAGAATCCAACCTTG
AGCACATAGAGTCGAGGCTAGTCCTGCCCTCCTATTGATAGAGCTTTGTA
TTTGATTCGCTTTTGTTATGAACTCTTGCCCTCGAGCGAGGGCACGCGGC
GCTATAGCTTATAAGACTTTATCGAATACGTTACGCTGATGCCCGCAACA
GCTCCAGTCACACCCGAGGTCGCCCCCGGCTTTGGGACTCTCTGGGTGTA
GAGTAAACAGCTAGTTTTTTTTAATACAGTGGAGGGCTGAGACGTCAATG
TAACTTCTCCTGTCAAAGGATTCGAGGTCCGGCGAAAAGCGGCCATTGGT
AGCTAGCTCAGCACTCCTCTCCCCCCCGTATGTAATATTTACTCCGTTTT
TACTGCGGTTGAGGGCTGAAGCGCCAAAGGGGTCTTTACTCTCGAGGGTT
GGAGATTTAGGATTTGGGGATACCAGGGTTTACAGTCCGGGGAGAGCGGC
CGACGGTGACTCAGCATTTTTTTCCCCTCGATATCCCCGTGGGCTCCCGC
ATCGCGTTACATGATGACTATAACTCAACTTTTTACTGCAGCTACCGTTG
AGTTTTGTCTGTTGTTATAATAATTCGTATTGCACCTCGTACTTCTTTTT
ATTTTATATCGATCCCACAAAAATGAAAAAAAAAGTTACTCCCTTGCTGG
ACTGGTAAAGCTTGTCCAATTAGGAACACGCCGCATTTTTGTTTTCCCTT
TCCAGGCGACCGCGCGTGGGATGGCGGTACGACGCACAGCAGGCCGTAGG
ATGGCGGATTCACGACGCCGGATCGCGGAAGCAGGGGAGAGAGCTCGTCA
AAAACCATCCCTAATCCTCGGAGTGAAGTAA

Coding sequence (CDS) from alignment at A-nodosum_M_contig1:2011434..2013014-

>mRNA_A-nodosum_M_contig1.146.1 ID=mRNA_A-nodosum_M_contig1.146.1|Name=mRNA_A-nodosum_M_contig1.146.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig1:2011434..2013014- (Ascophyllum nodosum dioecious)
GTGGCCGCGCGTTGGCTTGCCCTCGGCCGGCGATTTTCGAGGCACAAGGC
GGCATCAGTGATTCAGGCGACCGCGCGTGGGATGGCGGTACGACGCACAG
CAGGCCGTAGGATGGCGGATTCACGACGCCGGATCGCGGAAGCAGGGGAG
AGAGCTCGTCAAAAACCATCCCTAATCCTCGGAGTGAAGTAA