mRNA_A-nodosum_M_contig1.133.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.133.1
Unique NamemRNA_A-nodosum_M_contig1.133.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.530e-18
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  599 GPGFFFIRAFIPRQRLIEYMIRHIPTLGMEEEDAKADFIRHIEEIKAFVPTE---KRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTE 859
            G G FF+       RL ++M+R++ T  MEE++AKAD++RH +E+ A V  +   + LEFSV++GW PLCKFL V VPDVPFP+ NSR E
Sbjct:  298 GWGIFFLEVLKSDVRLYKHMLRYMKTHTMEEDEAKADYVRHNKEVLAHVGADNGRELLEFSVEQGWGPLCKFLDVSVPDVPFPKVNSREE 387          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: A0A4R4XJW2_9ACTN (Sulfotransferase family protein n=2 Tax=unclassified Actinomadura TaxID=2626254 RepID=A0A4R4XJW2_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 1.150e-15
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  632 PRQRLIEYMI-RHIPTLG------------------MEEEDAKAD-FIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQVVIGR 883
            PRQR++ +++ R  P L                   +E+ D   D F RH+ E+KA +P  + L F V EGWEPLC FLGVPVPD PFPR+N R E+++ + GR
Sbjct:  116 PRQRIVRWLVARRSPDLARLNDLVETTIVDRAFGGRIEDRDHVLDVFHRHVAEVKAAIPDGRLLVFDVAEGWEPLCAFLGVPVPDGPFPRSNDRAEFHRHLSGR 219          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: A0A017HJT8_9RHOB (Uncharacterized protein n=1 Tax=Rubellimicrobium mesophilum DSM 19309 TaxID=442562 RepID=A0A017HJT8_9RHOB)

HSP 1 Score: 83.6 bits (205), Expect = 1.780e-15
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  680 GMEEEDAKADFIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQ 868
            G++ E  +A F  H E +KA VP E+ L F V+EGW PLC FLGVPVPD PFPRTN R E+ Q
Sbjct:  138 GLDREGLRAAFAAHTEAVKAAVPAERLLVFEVREGWAPLCAFLGVPVPDEPFPRTNEREEFWQ 200          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: A0A317FJX5_9PROT (Sulfotransferase family protein n=1 Tax=Falsiroseomonas bella TaxID=2184016 RepID=A0A317FJX5_9PROT)

HSP 1 Score: 82.8 bits (203), Expect = 3.230e-15
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  686 EEEDAKADFIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQVVIG 880
            ++E A A F R I E+KA +P E+ L F V EGWEPLC+FLGVPVPD PFPR NS  E+  +V G
Sbjct:  145 DKEGALAAFRRRIAEVKAAIPAERLLVFDVAEGWEPLCRFLGVPVPDAPFPRVNSTEEFWPMVRG 209          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: UPI000784F9CE (hypothetical protein n=2 Tax=Herbidospora TaxID=28443 RepID=UPI000784F9CE)

HSP 1 Score: 83.2 bits (204), Expect = 3.450e-15
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  635 RQRLIEYMIRHIPTLGMEEEDAKAD-------------------FIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQ 868
            R+ L    +R +P + +  + AKA                    F RH+EE++A +P ++ L F  +EGWEPLC+FLGVPVPDVPFP  N RT +N+
Sbjct:  119 RRELHRLALRRVPEMALFPKMAKATVADQVFGGRIGDRAHCVEVFRRHVEEVEAAIPADRLLVFECREGWEPLCRFLGVPVPDVPFPHVNDRTHFNR 215          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: UPI000A7F1CE9 (sulfotransferase family protein n=3 Tax=Herbidospora TaxID=28443 RepID=UPI000A7F1CE9)

HSP 1 Score: 83.6 bits (205), Expect = 5.430e-15
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  656 MIRHIPTLGMEEEDAKAD-------------------FIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQ 868
            M+R +P + +    AKA                    F+RH EE+KA VP ++ L +  +EGWEPLC+FLGVPVPDVPFP  N RT++N+
Sbjct:  176 MLRRVPEMALFPRMAKATVADRVFGGRLDDREHCIEVFLRHNEEVKAAVPADRLLVYECREGWEPLCRFLGVPVPDVPFPHVNDRTQFNR 265          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: UPI000A853596 (sulfotransferase family protein n=1 Tax=Herbidospora mongoliensis TaxID=688067 RepID=UPI000A853596)

HSP 1 Score: 82.4 bits (202), Expect = 5.920e-15
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  710 FIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQ 868
            F RHIEE++A +P E+ L F  +EGWEPLC+FLGVPVPDVPFP  N R ++N+
Sbjct:  163 FRRHIEEVRATIPAERLLVFECREGWEPLCRFLGVPVPDVPFPHVNDRIDFNR 215          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: UPI001ADFD5B3 (sulfotransferase family protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001ADFD5B3)

HSP 1 Score: 81.6 bits (200), Expect = 1.070e-14
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  671 PTLGMEEEDAKADFIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQV 871
            P   ++EE+A A F RH+ +++A VP ++ L F VKEGWEPLC FLGVPVPD  FPR N    + QV
Sbjct:  143 PLNELDEEEAVAAFERHVADVRASVPQDRLLVFEVKEGWEPLCAFLGVPVPDEEFPRVNEAAGFRQV 209          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: A0A522QUM4_9GAMM (Uncharacterized protein n=1 Tax=Rhodanobacteraceae bacterium TaxID=2052182 RepID=A0A522QUM4_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 1.510e-14
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  698 AKADFIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQVVIG 880
            A AD+ +H+ +++  VP ++ L FSVKEGW+PLC F+GVPVPD PFPR N R ++ Q++ G
Sbjct:  158 AIADYHQHVVDVQTAVPPDRLLVFSVKEGWKPLCDFIGVPVPDTPFPRVNDREQFRQIIKG 218          
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Match: A0A0U2PDY3_9ALTE (Uncharacterized protein n=2 Tax=Lacimicrobium alkaliphilum TaxID=1526571 RepID=A0A0U2PDY3_9ALTE)

HSP 1 Score: 80.5 bits (197), Expect = 1.900e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  680 GMEEEDAKADFIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKFLGVPVPDVPFPRTNSRTEYNQVVIGR 883
            G+E +  K  FI H E +KA +P  + L F VKEGW+PLC FL +PVPD PFPRTN R E+   V G+
Sbjct:  137 GLEHQQLKDAFIAHNEAVKATIPARQLLVFEVKEGWQPLCDFLELPVPDKPFPRTNHRQEFWDRVSGK 204          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU57_ECTSI1.530e-1851.11UEV domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4R4XJW2_9ACTN1.150e-1542.31Sulfotransferase family protein n=2 Tax=unclassifi... [more]
A0A017HJT8_9RHOB1.780e-1558.73Uncharacterized protein n=1 Tax=Rubellimicrobium m... [more]
A0A317FJX5_9PROT3.230e-1558.46Sulfotransferase family protein n=1 Tax=Falsiroseo... [more]
UPI000784F9CE3.450e-1540.21hypothetical protein n=2 Tax=Herbidospora TaxID=28... [more]
UPI000A7F1CE95.430e-1543.33sulfotransferase family protein n=3 Tax=Herbidospo... [more]
UPI000A8535965.920e-1562.26sulfotransferase family protein n=1 Tax=Herbidospo... [more]
UPI001ADFD5B31.070e-1453.73sulfotransferase family protein n=2 Tax=Streptomyc... [more]
A0A522QUM4_9GAMM1.510e-1452.46Uncharacterized protein n=1 Tax=Rhodanobacteraceae... [more]
A0A0U2PDY3_9ALTE1.900e-1452.94Uncharacterized protein n=2 Tax=Lacimicrobium alka... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:1891944..1893197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU57
Preferred nameSTP22
PFAMsUEV,Vps23_core
Model size886
Max annot lvl2759|Eukaryota
KEGG koko:K12183
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
Hectar predicted targeting categoryother localisation
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009898,GO:0009987,GO:0010008,GO:0010605,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016192,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042221,GO:0042493,GO:0042886,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046618,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090150,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1904669
Exons2
Evalue2.02e-18
EggNOG OGsKOG2391@1|root,KOG2391@2759|Eukaryota
DescriptionTumor susceptibility
Cds size231
COG categoryO
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866344.728996-UTR-A-nodosum_M_contig1:1891943..18925981680866344.728996-UTR-A-nodosum_M_contig1:1891943..1892598Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 1891944..1892598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866344.7437992-CDS-A-nodosum_M_contig1:1892598..18927001680866344.7437992-CDS-A-nodosum_M_contig1:1892598..1892700Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1892599..1892700 +
1680866344.7525418-CDS-A-nodosum_M_contig1:1893068..18931971680866344.7525418-CDS-A-nodosum_M_contig1:1893068..1893197Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 1893069..1893197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.133.1prot_A-nodosum_M_contig1.133.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 1892599..1893197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.133.1

>prot_A-nodosum_M_contig1.133.1 ID=prot_A-nodosum_M_contig1.133.1|Name=mRNA_A-nodosum_M_contig1.133.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=77bp
MIRHIPTLGMEEEDAKADFIRHIEEIKAFVPTEKRLEFSVKEGWEPLCKF
LGVPVPDVPFPRTNSRTEYNQVVIGR*
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mRNA from alignment at A-nodosum_M_contig1:1891944..1893197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.133.1 ID=mRNA_A-nodosum_M_contig1.133.1|Name=mRNA_A-nodosum_M_contig1.133.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1254bp|location=Sequence derived from alignment at A-nodosum_M_contig1:1891944..1893197+ (Ascophyllum nodosum dioecious)
ACTTCAAGAGACCCCGACGCTTGGTGGGCAAGTGTTATCGAAAGTATCCA CGATAAGGCACCACACAATCGCGATTGGGGTGAGGTCGAAGTTCGACACA GTATGTCATCAGTTATCTCCCAAGCGGGCCTATGACGCTCTGCCTTTCAC CATTTCAAGTTGCTTTGAGGACGAGGGTCTGTGGTCACCCACATTGCGGG TACGCTTTGTCGAGATATCTTGGACCCTCGATGCGTCACACTTGCATTGG AAACTATTTTCGTAGTTGAATATGCTCTGGTGGAATCGGGAGGGGGGTTA AGTAATGCGCGCGAGACAGCGTTACGGCAACGGTAGACGCTTCAGGACTC TCTACCTTACCAACGCTAGGCTTCTGGATGTTACTCATTCACCTACTGCG TATCGCCTGTTCGAAATGCGCCCCCTATTTTGTTTATAGTGCCCTTTGTC TCCCTCTGTCTTCCGTATGGTACGGAAAAACCTTATCTAAGGTTGCTTGC CAAGTTTTCTGCACATAAGGGTAAATTATGCGCTTTCCCCTCCTGTAGTC GTATTTTCTTAGACGCATCATTAACTTTGATATCTCATTTTATGTTTTGG TCCAGGATTTTTCTTCATCCGGGCGTTCATTCCGCGGCAACGACTAATAG AGTACATGATTCGGCATATCCCAACTTTGGGCATGGAAGAGGAAGACGCG AAGGCAGACTTCATCCGCCACATTGAAGAGATCAAGGCCTTCGTACCGAC CGAAAAGGTAGCTCCGAGAGCGTATTCCGCGACGTGAACCTCCAGCAATA GAGCGCTCCAATTTTGTGCGTGTACTTCAGCCAAATCCGAGTCGCCAAGC TGAAGGCGGCGGCTAAGTCAAAGTGTTCATTAATTAGTTCCTCGTCTAGC GTCCCTCAAGAGGTCTCGGTAGTGCCGGTGCTGCGGCTTGCGTTGCGTCT CGATTGTTGTTCGCTTTTTCTTCATGTCAACCAATTTGTACATATAGCTA CGGCGACACCACCGGGCTCACCGTGTGAGCTTGGGTGGTGAGCTTGTATT AATAGTGTCATAACGTGCCAAGCCGATAGATATCTCGACATCCACACGTA ATGACTCTTCGTCGTTGCGACTCAGCGGCTGGAGTTCTCGGTGAAGGAAG GCTGGGAACCGTTGTGCAAGTTTCTTGGGGTGCCGGTTCCGGACGTCCCC TTTCCGAGGACAAACTCTCGCACGGAATATAATCAGGTCGTCATCGGCAG GTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:1891944..1893197+

>mRNA_A-nodosum_M_contig1.133.1 ID=mRNA_A-nodosum_M_contig1.133.1|Name=mRNA_A-nodosum_M_contig1.133.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=231bp|location=Sequence derived from alignment at A-nodosum_M_contig1:1891944..1893197+ (Ascophyllum nodosum dioecious)
ATGATTCGGCATATCCCAACTTTGGGCATGGAAGAGGAAGACGCGAAGGC
AGACTTCATCCGCCACATTGAAGAGATCAAGGCCTTCGTACCGACCGAAA
AGCGGCTGGAGTTCTCGGTGAAGGAAGGCTGGGAACCGTTGTGCAAGTTT
CTTGGGGTGCCGGTTCCGGACGTCCCCTTTCCGAGGACAAACTCTCGCAC
GGAATATAATCAGGTCGTCATCGGCAGGTGA
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